Simon Frost sdwfrost
sdwfrost
/ phylotree.css
Last active
August 17, 2018 09:40
Builds of phylotree.css for use in Observable
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| .tree-selection-brush .extent { | |
| fill-opacity: .05; | |
| stroke: #fff; | |
| shape-rendering: crispEdges; | |
| } | |
| .tree-scale-bar text { | |
| font: sans-serif; | |
| } |
sdwfrost
/ nigeria_states.geojson
Created
April 25, 2018 15:21
Nigerian states in geoJSON from https://rory.carto.com/tables/nigeria_states/public
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sdwfrost
/ U07611.fas
Created
April 24, 2018 12:47
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| >U07611.2 Hawaii calicivirus nonstructural polyprotein and capsid protein genes, complete cds; and unknown gene | |
| GTGAATGAAGATGGCGTCTAACGACGCTTCCGCTGCCGCTGCTGCTAACAGCAACAACGACACCGTAAAA | |
| TCTTCAAGTGACGGAGTACTCTCTAGTATGGCTGTCACCTTTAAACGGGCCCTCGGGGCGCGGCCTAAGC | |
| AGCCGCCCCCGAGGGAAATACCACAAAGACCCCCACGACCACCCACTCCAGAGTTGATCAAAAAGGTCCC | |
| CCCTCCCCCGCCCAATGGGGAGGATGAACCAGTGGTCTCCTATAGCGTCAAAGATGGCGTTTCCGGGCTG | |
| CCTGACCTCTCCACCGTCAGACAGCCACCTGAGAACAACACGGCGTTTAGCGTTCCTCCACTCAACCAGA | |
| GGGAGAACAGGGATGCCAAGGAGCCACTGACTGGAACAATCCTGGAAATGTGGGATGGGGAGATTTACCA | |
| TTATGGCTTGTATGTGGAACAAGGCCTGGTGCTTGGCGTGCACAAACCGCCAGCGGCCATCAGCCTCGCT | |
| AAAGTTGAATTAACACCACTCTCTTTATACTGGAGACCTGTGTACACCCCCCAGTATCTCATCTCCCCAG | |
| ACACTCTTAGGAGGCTCCATGGGGAATCGTTCCCTTACACAGCTTTTGACAACAACTGCTATGCCTTCTG |
sdwfrost
/ blog_tensorflow_variable_sequence_classification.py
Created
April 4, 2018 15:02
— forked from danijar/blog_tensorflow_variable_sequence_classification.py
TensorFlow Variable-Length Sequence Classification
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| # Working example for my blog post at: | |
| # http://danijar.com/variable-sequence-lengths-in-tensorflow/ | |
| import functools | |
| import sets | |
| import tensorflow as tf | |
| from tensorflow.models.rnn import rnn_cell | |
| from tensorflow.models.rnn import rnn | |
| def lazy_property(function): |
sdwfrost
/ min-char-rnn-tensorflow.py
Created
April 1, 2018 19:49
— forked from vinhkhuc/min-char-rnn-tensorflow.py
Vanilla Char-RNN using TensorFlow
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| """ | |
| Vanilla Char-RNN using TensorFlow by Vinh Khuc (@knvinh). | |
| Adapted from Karpathy's min-char-rnn.py | |
| https://gist.github.com/karpathy/d4dee566867f8291f086 | |
| Requires tensorflow>=1.0 | |
| BSD License | |
| """ | |
| import random | |
| import numpy as np | |
| import tensorflow as tf |
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| (function webpackUniversalModuleDefinition(root, factory) { | |
| if(typeof exports === 'object' && typeof module === 'object') | |
| module.exports = factory(); | |
| else if(typeof define === 'function' && define.amd) | |
| define([], factory); | |
| else if(typeof exports === 'object') | |
| exports["libR"] = factory(); | |
| else | |
| root["libR"] = factory(); | |
| })(this, function() { |
sdwfrost
/ add.rs
Created
March 17, 2018 06:46
— forked from steveklabnik/add.rs
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| #![feature(lang_items)] | |
| #![no_std] | |
| #[no_mangle] | |
| pub fn add_one(x: i32) -> i32 { | |
| x + 1 | |
| } | |
| // needed for no_std |
sdwfrost
/ binaryheap.js
Created
March 5, 2018 15:29
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| /* BEGIN node2umd PREFIX */ | |
| ;(function(define) { define(function(require, exports, module) { | |
| /* END node2umd PREFIX */ | |
| (function(exports){ | |
| "use strict"; | |
| function score_int(a) { return a; } | |
| function score_loc(a) { return a; } | |
| function BinaryHeap(scoreFunction, locfunc){ |
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| /* BEGIN node2umd PREFIX */ | |
| ;(function(define) { define(function(require, exports, module) { | |
| /* END node2umd PREFIX */ | |
| var Nt = function() { | |
| 'use strict'; | |
| function makeArray(length, val) { | |
| if (val === undefined) { val = 0|0; } | |
| if (val < 0) { val = 0; } |
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| >MG839376.1 HIV-1 isolate EPHIC2_2017_ETHIOPIA_RTPCR from Ethiopia pol protein (pol) gene, partial cds | |
| CCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAATAGGGGGACAGCTAAAGGAGGCTCTCT | |
| YAGACACAGGAGCAGATGATACMGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT | |
| AGGAGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAAATAGCTATAGAAATTTGTGGAAAAAAG | |
| GCTATAGGTTCAGTATTAGTGGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGMCTCAGCTTG | |
| GATGTACACTAAATTTTCCAATTAGTCCTATTGAAACTGTCCCAGTAAAATTGAAGCCAGGAATGGATGG | |
| CCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTMACAGAAATTTGTGCAGAAATG | |
| GAAAAGGAAGGAAAAATYACAAAAATTGGGCCTGAAAATCCATATAACACTCCAGTATTTGCCATAAAAA | |
| AGAAAGACAGTACCAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAATAAAAGAACTCAAGACTTTTG | |
| GGAGGTTCAATTAGGAATACCACATCCAGGAGGGTTAAAAAGGAACAAATCAGTGACAGTACTGGATGTG |