seandavi

#!/path/2/Rscript

# License: CC0 (just be nice and point others to where you got this)
# Author: Robert M Flight <[email protected]>, github.com/rmflight
#
# This is a post-commit hook that after a successful commit subsequently increments the package version in DESCRIPTION
# and commits that. Analogous to the pre-commit at https://gist.github.com/rmflight/8863882, but useful if you only have
# good reasons for not doing it on the pre-commit.
#
# To install it, simply copy this into the ".git/hooks/post-commit" file of your git repo, change /path/2/Rscript, and make

seandavi

from __future__ import print_function
import httplib2
import os

from apiclient import discovery
import oauth2client
from oauth2client import client
from oauth2client import tools

seandavi

// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console

seandavi

.require <-
    function(pkg)
{
    withCallingHandlers({
        suppressPackageStartupMessages({
            require(pkg, character.only=TRUE, quietly=TRUE)
        })
    }, warning=function(w) {
        invokeRestart("muffleWarning")
    }) || {

seandavi

##########################################
# Step 0. setup a list of sample names.  
# Assume that each of your gzipped
# FASTQ files is named as follows:
# sample1.1.fq.gz
# sample1.2.fq.gz
# sample2.1.fq.gz
# sample2.2.fq.gz
# ...
# sampleN.1.fq.gz