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Sean Davis
seandavi
- Pediatric oncologist
- Cancer researcher
- Data scientist
- Community organizer
How can we make some matrix operations more efficient in Bioconductor
Goal: can we efficiently perform a single-cell analysis fully in memory, even for a big dataset
like the 1.3M cells dataset? As long as the machine has enough memory.
Here are some low-hanging fruits that have the potential to significantly improve the
current situation.
How to deploy a Prefect agent to Google Kubernetes Engine
How to deploy a Prefect agent to Google Kubernetes Engine
This post contains code and commands you can use to deploy Prefect agents to Google Cloud’s Google Kubernetes Engine. The agents stand ready to execute workflows triggered by Prefect projects. One agent can run tasks from multiple projects.
The example here demonstrates how to create a single agent with minimal customization. It is configured with a Dockerfile, which installs necessary dependencies, and a k8s.cfg file, which connects the system to a Prefect account.
Agents are deployed via the gcloud command-line utility and its kubectl extension. Proper permissions within a project on Google Cloud are required.
How to use PostgreSQL's LISTEN/NOTIFY as a simple message queue with psycopg2 and asyncio
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Download data on Coronavirus cases and deaths from the government dashboard API
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A simple example of using websockets with starlette.io (it's super easy, wow!)
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Playing w/ data mask example from tidy eval cheatsheet
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