krlmlr

# Add this to your .Rprofile
options(
  error = quote(rlang::entrace()), 
  rlang__backtrace_on_error = "collapse" # or "branch" or "full"
)

batpigandme

---
title: "Data mask stuff"
output: github_document
---
```{r include=FALSE, message=FALSE, warning=FALSE}
knitr::opts_chunk$set(
  message = FALSE, warning = FALSE, echo = TRUE, fig.retina = 2, collapse = TRUE
)
```

mohanpedala

Table of Contents

• set -e, -u, -x, -o pipefail
• set -e
• set -x
• set -u
• set -o pipefail
• Setting IFS
• Original Reference

set -e, -u, -x, -o pipefail

crawles

# Can work for other delimiters as well
# Tab delimiter
bq load --source_format=CSV --field_delimiter=tab \
  --skip_leading_rows 1 -<destination_table> <source> \
  <schema>
  

goodwill

[Install]
WantedBy=multi-user.target

[Unit]
Description=Google Cloud Compute Engine SQL Proxy
Requires=networking.service
After=networking.service

[Service]
Type=simple

nathanborror

*** Cluster Setup for Google Container Engine ***

0/  Install and configure local gcloud and kubectl: https://cloud.google.com/sdk/docs/
    > gcloud components install kubectl

1/  Configure Google Cloud account:
    > gcloud config set account YOUR_EMAIL_ADDRESS
    > gcloud config set project YOUR_PROJECT_ID
    > gcloud config set compute/zone us-west1-a
    > gcloud config set container/cluster example

9bic

#cloud-config

users:
  - name: cloudservice
    groups: docker
    uid: 2000

write_files:
  - path: /home/cloudservice/currentdir/gcloud-sdk-setup
    permissions: '0644'

crazyhottommy

convert uuid to TCGA barcode

I downloaded the manifest file from gdc, but it only has the uuid, I will need to convert them to TCGA barcode.

read this https://support.bioconductor.org/p/89315/ and https://support.bioconductor.org/p/89021/

A function from the link above

library(httr)

pydevops

• 0.1. References
• 0.2. Other cheatsheets
• 0.3. Manage multiple gcloud config configurations
  • 0.3.1. Switch gcloud context with gcloud config
• 0.4. Credentials
• 0.5. info
• 0.6. projects
• 0.7. zones & regions
• 0.8. Organization
• 0.9. billing

michaelknurr

#!/bin/bash

# check, if another export is currently running
if [ `ps -ef|grep "keycloak.migration.action=export" |grep -v grep |wc -l` != 0 ] ; then
	echo "Another export is currently running";
	exit 1;
fi

# try to extract keycloak home from running keycloak instance
KEYCLOAK_HOME=$(ps -ef|grep -v grep|grep jboss.home.dir|grep keycloak|sed 's/.*\(jboss.home.dir=\)//'|awk '{print $1}')