Edit: This list is now maintained in the rust-anthology repo.
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import threading | |
''' | |
A generic iterator and generator that takes any iterator and wrap it to make it thread safe. | |
This method was introducted by Anand Chitipothu in http://anandology.com/blog/using-iterators-and-generators/ | |
but was not compatible with python 3. This modified version is now compatible and works both in python 2.8 and 3.0 | |
''' | |
class threadsafe_iter: | |
"""Takes an iterator/generator and makes it thread-safe by | |
serializing call to the `next` method of given iterator/generator. | |
""" |
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#!/bin/bash | |
# check, if another export is currently running | |
if [ `ps -ef|grep "keycloak.migration.action=export" |grep -v grep |wc -l` != 0 ] ; then | |
echo "Another export is currently running"; | |
exit 1; | |
fi | |
# try to extract keycloak home from running keycloak instance | |
KEYCLOAK_HOME=$(ps -ef|grep -v grep|grep jboss.home.dir|grep keycloak|sed 's/.*\(jboss.home.dir=\)//'|awk '{print $1}') |
I downloaded the manifest file from gdc, but it only has the uuid, I will need to convert them to TCGA barcode.
read this https://support.bioconductor.org/p/89315/ and https://support.bioconductor.org/p/89021/
A function from the link above
library(httr)
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#cloud-config | |
users: | |
- name: cloudservice | |
groups: docker | |
uid: 2000 | |
write_files: | |
- path: /home/cloudservice/currentdir/gcloud-sdk-setup | |
permissions: '0644' |
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*** Cluster Setup for Google Container Engine *** | |
0/ Install and configure local gcloud and kubectl: https://cloud.google.com/sdk/docs/ | |
> gcloud components install kubectl | |
1/ Configure Google Cloud account: | |
> gcloud config set account YOUR_EMAIL_ADDRESS | |
> gcloud config set project YOUR_PROJECT_ID | |
> gcloud config set compute/zone us-west1-a | |
> gcloud config set container/cluster example |
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[Install] | |
WantedBy=multi-user.target | |
[Unit] | |
Description=Google Cloud Compute Engine SQL Proxy | |
Requires=networking.service | |
After=networking.service | |
[Service] | |
Type=simple |
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# Can work for other delimiters as well | |
# Tab delimiter | |
bq load --source_format=CSV --field_delimiter=tab \ | |
--skip_leading_rows 1 -<destination_table> <source> \ | |
<schema> | |