Sean Davis seandavi

	Name	Description
	task_id	Task ID.
	hash	Task hash code.
	native_id	Task ID given by the underlying execution system e.g. POSIX process PID when executed locally, job ID when executed by a grid engine, etc.
	process	Nextflow process name.
	tag	User provided identifier associated this task.
	name	Task name.
	status	Task status.
	exit	POSIX process exit status.
	module	Environment module used to run the task.

Example R API

To use, clone this repository and then run:

Rscript api.R

Test using the following URLs:

Run a Bioconductor Workshop on a Google Cloud Instance

To run one of the workshops for Bioc2020, follow these steps after determining which workshop you'd like to run and finding the docker image name. Substitute the docker image name below for tidytranscriptomics if desired.

Prereqs

A google cloud platform account (which you can create with $300 free credit if you don't have one)
Installed google cloud sdk (the gcloud command)

	### Keybase proof

	I hereby claim:

	* I am seandavi on github.
	* I am seandavi (https://keybase.io/seandavi) on keybase.
	* I have a public key ASAQ8VtxEXZOXbXUmfgPSsE2L-mF4g5oHcMRkosW0EszDgo

	To claim this, I am signing this object:

	library(sars2pack)
	library(dplyr)
	library(zoo)
	library(cowplot)
	library(ggplot2)

	y = ecdc_data() %>% dplyr::group_by(iso3c) %>%
	add_incidence_column(count_column = 'confirmed') %>%
	align_to_baseline(confirmed>50,group_vars = 'iso3c') %>%
	dplyr::arrange(date) %>%

	browseURL('https://seandavi.github.io/ITR/r_intro_mechanics.html')
	1 + 1
	x = 10
	x
	y = 20
	y
	y + x

	browseURL('https://seandavi.github.io/ITR/vectors.html')
	# vectors

	---
	title: "Big Data Approaches"
	subtitle: "Where to go with Bioconductor"
	event: "Bioconductor Technical Advisory Board Meeting"
	#author: Sean Davis
	date: "`r Sys.Date()`"
	output:
	BiocStyle::html_document
	---

	library(tibble)
	library(jsonlite)
	library(curl)
	as_tibble(jsonlite::fromJSON(curl('https://api.omicidx.cancerdatasci.org/sra/studies/ERP009142/runs?size=500'))$hits)

	"""
	Creates, updates, and deletes a job object.
	"""

	from os import path
	import os

	import yaml
	import uuid