Andreas Stroehlein stroehleina

Bioinformatician at the German Federal Institute for Risk Assessment

stroehleina / kill_app_by_pid.sh

Created November 29, 2023 09:07

Find processes by name and SIGTERM kill them all (when an application is hung up and cannot be closed)

	# Usage: kill_app_by_pid.sh <name_of_application>
	# https://docs.oracle.com/cd/E19253-01/817-0403/eoizf/index.html
	# WARNING: The –9 signal should not be used to kill certain processes, such as a database process, or an LDAP server process.
	# The result is that data might be lost.
	ps -u $USER -eaf \| grep -i $1 \| awk '{print $2}' \| while read line; do kill -9 $line; done

stroehleina / conda-find.sh

Created April 12, 2021 06:20

Function that can be added as an alias to your ~/.bashrc to find all conda environments that contain a particular package (and optionally version)

	#Usage: conda-find.sh my-lost-package my-version

	conda info --envs \|
	grep -v "#" \|
	sed 's/\s\+/\t/' \|
	cut -f2 \|
	sed '/^$/d' \|
	sed 's/^\*\s\+//' \|
	while read line; do
	conda list -p $line \|

	#Usage: conda-find.sh my-lost-package my-version

	conda info --envs \|
	grep -v "#" \|
	sed 's/\s\+/\t/' \|
	cut -f2 \|
	sed '/^$/d' \|
	sed 's/^\*\s\+//' \|
	while read line; do
	conda list -p $line \|