bedAllzip.sh

#!/bin/sh


echo "This program compress bed files to zip files in the folder"
echo "last update 2012.3.11 ........................................."


#Retrive filenames
Files=`ls`
m2=0



for var2 in $Files; 
	do
	echo "in var2 file $var2"

  if [[ "$var2" =~ ".bed" ]];then
		ARRAY2[$m2]=$var2
		m2=`expr $m2+1`
	fi
done



for afile in "${ARRAY2[@]}";
	do 
	echo "data is...........................$afile"
	case $afile in
		*.bed)
		bfile=$(echo $afile | sed 's/.bed//;')
		;;
	esac

	eval "zip $bfile.zip $afile";
done