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Code to generate graphs for our IBET paper, "Road Salt: at Fault? The Effect of Chloride Concentration on the Mass of Ambystoma maculatum Egg Masses"
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| # ourdata is data we collected (from the 2018-2019 school year) | |
| ourdata <- | |
| data.frame( | |
| chloride = c( | |
| 1.233333333, | |
| 0.866666667, | |
| 2.8, | |
| 1, | |
| 1.2, | |
| 0.6, | |
| 1.3, | |
| 0.933333333, | |
| 0.2, | |
| 0.3, | |
| 1.6, | |
| 0.65, | |
| 0.6, | |
| 0.7, | |
| 0.8, | |
| 0.6666666667, | |
| 0.925 | |
| ), | |
| mass = c( | |
| 270, | |
| 273.3333333, | |
| 140, | |
| 165, | |
| 106.667, | |
| 145, | |
| 140, | |
| 160, | |
| 95, | |
| 170, | |
| 166.6666667, | |
| 80, | |
| 92, | |
| 120, | |
| 112.5, | |
| 133.3333333, | |
| 156 | |
| ) | |
| ) | |
| # hisdata is the historical data (from the 2017-2018 school year) | |
| hisdata <- | |
| data.frame( | |
| chloride = c( | |
| 1.8, | |
| 3.2, | |
| 2.2, | |
| 2.2, | |
| 5.8, | |
| 1.7, | |
| 1.9, | |
| 2.4, | |
| 3.4, | |
| 2.8, | |
| 2.95, | |
| 2.7, | |
| 5.1, | |
| 5.24, | |
| 5.6, | |
| 4.9, | |
| 6.1, | |
| 6.7 | |
| ), | |
| mass = c( | |
| 105, | |
| 100, | |
| 115, | |
| 110, | |
| 95, | |
| 165, | |
| 135, | |
| 120, | |
| 80, | |
| 90, | |
| 85, | |
| 86, | |
| 65, | |
| 70, | |
| 75, | |
| 90, | |
| 85, | |
| 40 | |
| ) | |
| ) | |
| par(family = "Times New Roman") | |
| plot(lm(ourdata), which = 1) | |
| abline(0, 0) | |
| hist( | |
| resid(lm(ourdata)), | |
| col = "gray", | |
| main = "Histogram of Residuals", | |
| xlab = "Residual", | |
| ylab = "Frequency" | |
| ) | |
| library(ggplot2) | |
| # ggplot(ourdata, aes(x = ourdata$chloride, ourdata$mass)) + geom_point(aes(x = chloride, y = mass), stat = "identity") + theme_classic() + theme(axis.title.x = element_text(size = 32, family = "Pontano Sans"), axis.title.y = element_text(size = 32, family = "Pontano Sans"), axis.title = element_text(size = 18, family = "Pontano Sans"), plot.caption = element_text(hjust = 0, family = "Pontano Sans"), axis.text = element_text(size = 24, family = "Pontano Sans")) + xlab("Average Chloride Concentration (ppm)") + ylab("Average Mass of Egg Masses (g)\n") + scale_y_continuous(breaks = seq(0, 300, by = 25)) + scale_x_continuous(breaks = seq(0, 21, by = 0.5)) + stat_smooth(method = "lm", col = "red") | |
| ourscat <- | |
| ggplot(ourdata, aes(x = ourdata$chloride, ourdata$mass)) + geom_point(aes(x = chloride, y = mass), stat = "identity") + theme_classic() + theme( | |
| axis.title.x = element_text(size = 32, family = "Calibri"), | |
| axis.title.y = element_text(size = 32, family = "Calibri"), | |
| axis.title = element_text(size = 18, family = "Calibri"), | |
| plot.caption = element_text(hjust = 0, family = "Calibri"), | |
| axis.text = element_text(size = 24, family = "Calibri") | |
| ) + xlab("Average Chloride Concentration (ppm)") + ylab("Average Mass of Egg Masses (g)\n") + scale_y_continuous(breaks = seq(0, 300, by = 25)) + scale_x_continuous(breaks = seq(0, 21, by = 0.5)) + stat_smooth(method = "lm", col = "red") | |
| ourscat | |
| library(officer) | |
| library(rvg) | |
| library(tidyverse) | |
| read_pptx() %>% | |
| add_slide(layout = "Title and Content", master = "Office Theme") %>% | |
| ph_with_vg(code = print(ourscat), type = "body") %>% | |
| print(target = "/tmp/ourscat.pptx") |
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| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text x='603.07' y='449.86' style='font-size: 19.20px; fill: #4D4D4D; font-family: Arial;' textLength='26.41px' lengthAdjust='spacingAndGlyphs'>5.5</text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text x='667.98' y='449.86' style='font-size: 19.20px; fill: #4D4D4D; font-family: Arial;' textLength='26.41px' lengthAdjust='spacingAndGlyphs'>6.0</text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text x='732.89' y='449.86' style='font-size: 19.20px; fill: #4D4D4D; font-family: Arial;' textLength='26.41px' lengthAdjust='spacingAndGlyphs'>6.5</text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text x='447.51' y='472.32' style='font-size: 24.00px; font-family: Arial;' textLength='0.00px' lengthAdjust='spacingAndGlyphs'></text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text x='242.07' y='498.24' style='font-size: 24.00px; font-family: Arial;' textLength='410.87px' lengthAdjust='spacingAndGlyphs'>Average Chloride Concentration (ppm)</text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text transform='translate(22.67,395.81) rotate(-90)' style='font-size: 24.00px; font-family: Arial;' textLength='354.81px' lengthAdjust='spacingAndGlyphs'>Average Mass of Egg Masses (g)</text></g> | |
| <g clip-path='url(#cpMHw4MTB8NTA2LjI1fDA=)'><text transform='translate(48.59,218.41) rotate(-90)' style='font-size: 24.00px; font-family: Arial;' textLength='0.00px' lengthAdjust='spacingAndGlyphs'></text></g> | |
| </svg> |
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