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Code to generate graphs for our IBET paper, "Road Salt: at Fault? The Effect of Chloride Concentration on the Mass of Ambystoma maculatum Egg Masses"
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# ourdata is data we collected (from the 2018-2019 school year) | |
ourdata <- | |
data.frame( | |
chloride = c( | |
1.233333333, | |
0.866666667, | |
2.8, | |
1, | |
1.2, | |
0.6, | |
1.3, | |
0.933333333, | |
0.2, | |
0.3, | |
1.6, | |
0.65, | |
0.6, | |
0.7, | |
0.8, | |
0.6666666667, | |
0.925 | |
), | |
mass = c( | |
270, | |
273.3333333, | |
140, | |
165, | |
106.667, | |
145, | |
140, | |
160, | |
95, | |
170, | |
166.6666667, | |
80, | |
92, | |
120, | |
112.5, | |
133.3333333, | |
156 | |
) | |
) | |
# hisdata is the historical data (from the 2017-2018 school year) | |
hisdata <- | |
data.frame( | |
chloride = c( | |
1.8, | |
3.2, | |
2.2, | |
2.2, | |
5.8, | |
1.7, | |
1.9, | |
2.4, | |
3.4, | |
2.8, | |
2.95, | |
2.7, | |
5.1, | |
5.24, | |
5.6, | |
4.9, | |
6.1, | |
6.7 | |
), | |
mass = c( | |
105, | |
100, | |
115, | |
110, | |
95, | |
165, | |
135, | |
120, | |
80, | |
90, | |
85, | |
86, | |
65, | |
70, | |
75, | |
90, | |
85, | |
40 | |
) | |
) | |
par(family = "Times New Roman") | |
plot(lm(ourdata), which = 1) | |
abline(0, 0) | |
hist( | |
resid(lm(ourdata)), | |
col = "gray", | |
main = "Histogram of Residuals", | |
xlab = "Residual", | |
ylab = "Frequency" | |
) | |
library(ggplot2) | |
# ggplot(ourdata, aes(x = ourdata$chloride, ourdata$mass)) + geom_point(aes(x = chloride, y = mass), stat = "identity") + theme_classic() + theme(axis.title.x = element_text(size = 32, family = "Pontano Sans"), axis.title.y = element_text(size = 32, family = "Pontano Sans"), axis.title = element_text(size = 18, family = "Pontano Sans"), plot.caption = element_text(hjust = 0, family = "Pontano Sans"), axis.text = element_text(size = 24, family = "Pontano Sans")) + xlab("Average Chloride Concentration (ppm)") + ylab("Average Mass of Egg Masses (g)\n") + scale_y_continuous(breaks = seq(0, 300, by = 25)) + scale_x_continuous(breaks = seq(0, 21, by = 0.5)) + stat_smooth(method = "lm", col = "red") | |
ourscat <- | |
ggplot(ourdata, aes(x = ourdata$chloride, ourdata$mass)) + geom_point(aes(x = chloride, y = mass), stat = "identity") + theme_classic() + theme( | |
axis.title.x = element_text(size = 32, family = "Calibri"), | |
axis.title.y = element_text(size = 32, family = "Calibri"), | |
axis.title = element_text(size = 18, family = "Calibri"), | |
plot.caption = element_text(hjust = 0, family = "Calibri"), | |
axis.text = element_text(size = 24, family = "Calibri") | |
) + xlab("Average Chloride Concentration (ppm)") + ylab("Average Mass of Egg Masses (g)\n") + scale_y_continuous(breaks = seq(0, 300, by = 25)) + scale_x_continuous(breaks = seq(0, 21, by = 0.5)) + stat_smooth(method = "lm", col = "red") | |
ourscat | |
library(officer) | |
library(rvg) | |
library(tidyverse) | |
read_pptx() %>% | |
add_slide(layout = "Title and Content", master = "Office Theme") %>% | |
ph_with_vg(code = print(ourscat), type = "body") %>% | |
print(target = "/tmp/ourscat.pptx") |
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