teonbrooks

import mne


# Make sure that your header, marker, and data file are in the same directory
fname_raw = 'path/to/header_file.vhdr'
# You can specify the EOG channels, and the miscellaneous channels
eog = []
misc = []

# to begin working with MNE, the only thing you need to specify is the header file

teonbrooks

import os.path as op
import inspect

from nose.tools import assert_equal, assert_true
from numpy.testing import assert_array_almost_equal, assert_array_equal
from numpy.testing import assert_raises
from scipy import io
import numpy as np

from mne.externals.six import iterbytes

teonbrooks

import numpy as np
import scipy as sp
import mne

mat = sp.io.loadmat('trig_s2.mat')
triggers, latency, urevent, duration, epoch = zip(*np.ravel(mat['triggers']))
latency = np.array(latency).ravel()
triggers = np.array(triggers, int).ravel()

raw = mne.fiff.edf.read_raw_edf(raw.info,'s2_2.edf', preload=True)

teonbrooks

    def check_bad_chs(self, threshold=0.05, reject=3e-12, n_chan=5):
        """
        Check for flat-line channels or channels that repeatedly exceeded
        threshold.
        """
        ds = self.load_events(drop_bad_chs=False)
        ds = ds[ds['experiment'] == 'fixation']
        threshold = ds.n_cases * threshold
        epochs = E.load.fiff.mne_epochs(ds, tmin=-.2, tmax=.6,
                                        drop_bad_chs=False, verbose=False,