jasmas

#!/bin/sh

echo Disabling vpnagentd...
sudo launchctl disable system/com.cisco.anyconnect.vpnagentd

echo Tearing down vpnagentd...
sudo launchctl bootout system /Library/LaunchDaemons/com.cisco.anyconnect.vpnagentd.plist

echo Deactivating Cisco AnyConnect Socket Filter Extension...
/Applications/Cisco/Cisco\ AnyConnect\ Socket\ Filter.app/Contents/MacOS/Cisco\ AnyConnect\ Socket\ Filter -deactivateExt

flaviut

These instructions have moved to https://github.com/emporia-vue-local/esphome

mlin

FROM ubuntu:20.04
RUN apt-get -qq update && DEBIAN_FRONTEND=noninteractive apt-get install -y \
    wget curl python3-pip python-is-python3
RUN pip3 install --system miniwdl==1.4.2

ENV UDOCKER_VERSION=1.3.1
WORKDIR /usr/local
RUN wget -nv https://github.com/indigo-dc/udocker/releases/download/v${UDOCKER_VERSION}/udocker-${UDOCKER_VERSION}.tar.gz \
    && tar zxf udocker-${UDOCKER_VERSION}.tar.gz \
    && rm udocker-${UDOCKER_VERSION}.tar.gz

nitheeshkl

Using GigE cam as webcam for Zoom/Skype/Teams

TL;DR: Creates a Gstreamer pipeline to read camera frames from a GigE camera, using Aravis library, and publish them as V4l2 camera source, using V4l2loopback, that can be read by video conferencing programs like Zoom/Skype/Teams.

gst-launch-1.0 aravissrc blocksize=5013504 h-binning=1 v-binning=1 ! video/x-bayer,format=rggb,framerate=100/5,width=2448,height=2048 ! bayer2rgb ! video/x-raw,format=RGBx ! videoconvert ! video/x-raw,format=YUY2 !  aspectratiocrop aspect-ratio=16/9 ! videoscale ! video/x-raw,width=1280,height=720 ! queue ! v4l2sink device=/dev/video0

---

The Basics

tomkinsc

#!/usr/bin/env python
import sys,os,hashlib,csv
from collections import defaultdict, OrderedDict
import argparse
#import shelve

from Bio import SeqIO
from Bio.SeqIO import FastaIO

# requirements: biopython

Natay

# Load pavion
library(pavian)

# Load the command line arguments 
args = commandArgs(trailingOnly=TRUE)

# Directory containing input data files.
INPUT_DIR = args[1]

# Directory to store the final HTML report.

lcarsos

#!/usr/bin/env bash

# Usage: sudo ./restore_functionality.sh

#ps aux | grep sentinel | awk -F "  +" '{print $2}' | xargs kill
while true; do
    launchctl kill SIGKILL system/com.crowdstrike.falcond
    launchctl kill SIGKILL system/com.crowdstrike.userdaemon
    launchctl kill SIGKILL system/com.sentinelone.sentineld
    launchctl kill SIGKILL system/com.sentinelone.sentineld-helper

elowy01

*bcftools filter
*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2)
qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz

*printing out info for only 2 samples:
bcftools view -s NA20818,NA20819 filename.vcf.gz

*printing stats only for variants passing the filter:
bcftools view -f PASS filename.vcf.gz

jhcepas

from collections import defaultdict
from ete3 import PhyloTree, TreeStyle, SeqMotifFace, TextFace, RectFace

alg = """
>Dme_001
MAEIPDETIQQFMALT---HNIAVQYLSEFGDLNEAL--YYASQTDDIKDRREEAH
>Dme_002
MAEIPDATIQQFMALTNVSHNIAVQY--EFGDLNEALNSYYAYQTDDQKDRREEAH
>Cfa_001
MAEIPDATIQ---ALTNVSHNIAVQYLSEFGDLNEALNSYYASQTDDQPDRREEAH

crmackay

taken from : https://github.com/broadinstitute/picard/blob/6f1c99263c2b8f712f06a07b50d4db0550ed4885/src/java/picard/illumina/parser/readers/BclReader.java#L47-74

BCL Files are base call and quality score binary files containing a (base,quality) pair for successive clusters. The file is structured as followed: Bytes 1-4 : unsigned int numClusters Bytes 5-numClusters + 5 : 1 byte base/quality score

The base/quality scores are organized as follows (with one exception, SEE BELOW):