Flip the coordinates of a Plate in OMERO.

Flip_Plate.py

#!/usr/bin/env python

"""
   Script for switching rows / columns of wells in plate. See https://www.openmicroscopy.org/community/posting.php?mode=reply&f=4&t=1211
"""
import omero
import omero.clients
from omero.gateway import BlitzGateway
from omero.rtypes import rint

user = 'root'
pw = 'ome'
host = 'localhost'

conn = BlitzGateway(user, pw, host=host, port=4064)
conn.connect()

pId = 55
plate = conn.getObject("Plate", pId)

wells = []
new_plate = omero.model.PlateI()
new_plate.name = omero.rtypes.rstring("Temporary plate")

# we're switching row & col AND moving to new plate to avoid ValidationExceptions
for well in plate.listChildren():
    c = well.column
    r = well.row
    well._obj.column = rint(r)
    well._obj.row = rint(c)
    well._obj.setPlate(new_plate)
    wells.append(well._obj)

wells = conn.getUpdateService().saveAndReturnArray(wells)   # Saves new Plate

# Now we can move wells back to the original Plate
for well in wells:
    new_plate = well.getPlate()     # get a ref to new Plate, so we can delete
    well.setPlate(omero.model.PlateI(pId, False))   # Using unloaded Plate

conn.getUpdateService().saveAndReturnArray(wells)   # Save Wells onto original Plate

# Finally, we can clean up by deleting our temporary plate
conn.getUpdateService().deleteObject(new_plate)