Created
July 25, 2014 11:16
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Examples of using the OMERO BlitzGateway search API following updates in 5.0.3.
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from omero.gateway import BlitzGateway | |
from datetime import datetime | |
import time | |
conn = BlitzGateway('will', 'ome', host="localhost") | |
conn.connect() | |
print "\n----> Simple Search: " | |
for i in conn.searchObjects(["Image"], "tiff"): | |
print i.OMERO_CLASS, i.getName() | |
# Create some dates to search between | |
fromDate = datetime(2014, 7, 1, 0, 0) | |
todayDate = datetime.now() | |
fromTime = time.mktime(fromDate.timetuple())*1000 | |
todayTime = time.mktime(todayDate.timetuple())*1000 | |
dateRange = [fromTime, todayTime] | |
print "\n----> Created from: ", fromDate | |
# All objects have a creation date / import date | |
for i in conn.searchObjects(["Dataset", "Image"], "tiff", created=dateRange): | |
print i.OMERO_CLASS, i.getName() | |
print "\n----> Acquired from:", fromDate | |
# Use the Acquisition Date for Images that have it (otherwise will default to creation date) | |
for i in conn.searchObjects(["Dataset", "Image"], "tiff", created=dateRange, useAcquisitionDate=True): | |
print i.OMERO_CLASS, i.getName() | |
print "\n----> Searching Fields:" | |
# E.g. 'name', 'description', 'annotation', 'file.name', 'file.format', 'file.contents', 'file.path' | |
# See https://www.openmicroscopy.org/site/support/omero5/developers/Modules/Search.html for full details | |
for i in conn.searchObjects(["Dataset", "Image"], "tiff", fields=["file.contents"]): | |
print i.OMERO_CLASS, i.getName() | |
print "\n----> Searching within groups / users:" | |
# By default, search applies only to the 'current' group and All users | |
# To seach a specific group/owner, use group/owner Id | |
# To search across all Groups use '-1' | |
myUserId = conn.getUserId() | |
for i in conn.searchObjects(["Dataset", "Image"], "tiff", searchGroup=-1, ownedBy=myUserId): | |
print i.OMERO_CLASS, i.getName() | |
print "\n----> Pagination: page 1" | |
# default batchSize is 1000 | |
for i in conn.searchObjects(["Image"], "tiff", batchSize=10): | |
print i.OMERO_CLASS, i.getName() | |
print "\n----> Pagination: page 2" | |
# page index is 0-based | |
for i in conn.searchObjects(["Image"], "tiff", batchSize=10, page=1): | |
print i.OMERO_CLASS, i.getName() | |
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