will-moore

#!/usr/bin/env python

import sys

import omero
import omero.cli
from omero.gateway import BlitzGateway
from omero.rtypes import wrap, rlong, rdouble, rint, rstring
from omero.model import DatasetI, ProjectI, TagAnnotationI

will-moore

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Copy Tags from Datasets or Images and apply them to the 
child images of the Dataset and/or other Datasets / Images
"""

import omero.scripts as scripts
from omero.gateway import BlitzGateway
from omero.rtypes import rstring, rlong

will-moore

"""
This script searches for Images, using database queries queries generated
from a number of parameters.
"""

import omero.scripts as scripts
from omero.gateway import BlitzGateway
from omero.rtypes import *

from datetime import datetime

will-moore

# Tool for developing regexes to use with OMERO.web to exclude blockedUrls from public access.
# To use, edit the regex.
# Add or remove urls you want to test from the list then run...
# It will print a statement you can use to configure OMERO with the regex you've used

# You may also want to remove the ability of visitors to switch user in the drop-down menu
# $ bin/omero config set omero.web.ui.menu.dropdown '{}'

import re

will-moore

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<OME xmlns="http://www.openmicroscopy.org/Schemas/OME/2013-06" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2013-06 http://www.openmicroscopy.org/Schemas/OME/2013-06/ome.xsd">
   <Instrument ID="Instrument:0">
      <Objective Correction="PlanApo" ID="Objective:12003" Immersion="Oil" LensNA="1.4" Manufacturer="Nikon" Model="93110" NominalMagnification="100.0" WorkingDistance="130.0"/>
   </Instrument>
   <Image ID="Image:0" Name="IN-GFP01_03_R3D.dv">
      <AcquisitionDate>2006-08-29T19:26:52</AcquisitionDate>
      <InstrumentRef ID="Instrument:0"/>
      <ObjectiveSettings ID="Objective:12003"/>
      <Pixels DimensionOrder="XYZCT" ID="Pixels:0" PhysicalSizeX="0.050801798701286316" PhysicalSizeY="0.050801798701286316" PhysicalSizeZ="0.20000000298023224" SizeC="4" SizeT="1" SizeX="552" SizeY="552" SizeZ="60" Type="uint16">

will-moore

from omero.gateway import BlitzGateway
import omero
from omero.rtypes import rtime, rlong, rstring, rlist, rint
from omero_model_ExperimenterI import ExperimenterI
from omero_model_ExperimenterGroupI import ExperimenterGroupI
from omero_model_PermissionsI import PermissionsI

conn = BlitzGateway('root', 'omero', host='localhost');
print conn.connect()

will-moore

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Script takes a list of Datasets and puts the first image from each Dataset
into a new Dataset, the second image of each into a new Dataset etc.
"""

import omero.scripts as scripts
from omero.gateway import BlitzGateway
import omero

will-moore

from omero.gateway import *
from omero.model import *
from omero.rtypes import *
from omero.util.tiles import *
from numpy import fromfunction

user = 'will'
pw = 'ome'
host = 'localhost'

will-moore

from omero.gateway import BlitzGateway
from datetime import datetime
import time


conn = BlitzGateway('will', 'ome', host="localhost")
conn.connect()

will-moore

# DEMO of how to use code example at https://gist.github.com/will-moore/5782494#file-metadata_search-py-L13

import omero
from omero.rtypes import rint, wrap, rdouble, unwrap
from omero.gateway import BlitzGateway

conn = BlitzGateway('will', 'ome', host='localhost', port=4064)
conn.connect()