vals

pwl

kdkorthauer

sudo sh -c 'echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list'
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
gpg -a --export E084DAB9 | sudo apt-key add -
sudo apt-get update
sudo apt-get -y install r-base libapparmor1 libcurl4-gnutls-dev libxml2-dev libssl-dev gdebi-core
sudo apt-get install libcairo2-dev
sudo apt-get install libxt-dev
sudo apt-get install git-core

sudo /bin/dd if=/dev/zero of=/var/swap.1 bs=1M count=1024

mikelove

accession2url <- function(x) {
  prefix <- "ftp://ftp.sra.ebi.ac.uk/vol1/fastq"
  dir1 <- paste0("/",substr(x,1,6))
  dir2 <- ifelse(nchar(x) == 9, "",
          ifelse(nchar(x) == 10, paste0("/00",substr(x,10,10)),
          ifelse(nchar(x) == 11, paste0("/0",substr(x,10,11)),
                                 paste0("/",substr(x,10,12)))))
  paste0(prefix,dir1,dir2,"/",x)
}

kevindavenport

MatsuuraKentaro

data {
  int N;
  int M;
  real<lower=0> Y[N];
}

parameters {
  real<lower=0> mu;
  real<lower=0> phi;
  real<lower=1, upper=2> theta;

smsharma

Useful tips and tricks for running on Princeton's computing clusters. (Adapted from https://gist.github.com/smsharma/c579c6563eed954f2283)

Feynman

feynman.princeton.edu

Feynman-hepheno has 3 nodes -- node022 with 16 cores and 128GB memory, and node040-node041 with 28 cores and 256GB memory.

• Three areas -- home (~), group (/group/hepheno/) and group storage (/mnt/hepheno/)
• Best to work from your user directory in /group/hepheno since ~ has very little storage space -- set a cd /group/hepheno/ in ~/.bashrc!
• The contents of /group/hepheno/group-setup.sh are automatically sourced on cd into the group directory /group/hepheno/:

macks22

"""
Implementations of:

    Probabilistic Matrix Factorization (PMF) [1],
    Bayesian PMF (BPMF) [2],
    Modified BPFM (mBPMF)

using `pymc3`. mBPMF is, to my knowledge, my own creation. It is an attempt
to circumvent the limitations of `pymc3` w/regards to the Wishart distribution:

lcomm

\documentclass[]{article}
\usepackage{tikz}
\usetikzlibrary{positioning}

\begin{document}

%Graph 1
\begin{figure}
	\caption{Graph 1}
	\large{\begin{tikzpicture}[%

ssokolow

-- Reasonably efficient pagination without OFFSET
-- SQLite version (Adapted from MS SQL syntax)
-- Source: http://www.phpbuilder.com/board/showpost.php?p=10376515&postcount=6

SELECT foo, bar, baz, quux FROM table
 WHERE oid NOT IN ( SELECT oid FROM table
                    ORDER BY title ASC LIMIT 50 )
 ORDER BY title ASC LIMIT 10