xguse’s gists

xguse / brownNoise.sh

Created March 11, 2011 23:11

brown noise generator using sox for linux. keywords: white pink red brown noise

	#!/bin/sh

	len='7:00:00'
	vol=1

	if [ "$1" != '' ]; then
	len=$1
	fi

	if [ "$2" != '' ]; then

xguse / fembot

Created November 29, 2011 21:48

Female robot voice that speaks text. Can be used as a tack-on after a long running command to tell you that it has finished. Uses espeak and sox/play. Allows setting volume and repeat value.

	#!/bin/sh

	slp=0s
	rep=0
	vol=1
	text='Type something Here for me to say.'

	while getopts 'w:r:v:t:' OPTION
	do
	case $OPTION in

xguse / ParseFastQ.py

Created February 19, 2012 22:43

Simple Python FastQ Parser class

	class ParseFastQ(object):
	"""Returns a read-by-read fastQ parser analogous to file.readline()"""
	def __init__(self,filePath,headerSymbols=['@','+']):
	"""Returns a read-by-read fastQ parser analogous to file.readline().
	Exmpl: parser.next()
	-OR-
	Its an iterator so you can do:
	for rec in parser:
	... do something with rec ...

xguse / bashrc

Last active December 16, 2015 09:39

Generic yet functional bash prompt template

	# ~/.bashrc: executed by bash(1) for non-login shells.
	# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
	# for examples

	# If not running interactively, don't do anything
	[ -z "$PS1" ] && return



	# Setup PATH env vars and variants

xguse / sort_example.py

Created June 30, 2013 21:38

example script to sort a file for seqanswers user marqudiego


	import sys


	in_file = sys.argv[1]

	in_data = open(in_file, 'rU')

	data_list = []

xguse / xpermutations.py

Created July 23, 2013 00:50

Generators for calculating a) the permutations of a sequence and b) the combinations and selections of a number of elements from a sequence. Uses Python 2.2 generators. Similar solutions found also in comp.lang.python Keywords: generator, combination, permutation, selection See also: http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/105962 …

	#!/usr/bin/env python

	__version__ = "1.0"

	"""xpermutations.py
	Generators for calculating a) the permutations of a sequence and
	b) the combinations and selections of a number of elements from a
	sequence. Uses Python 2.2 generators.

	Similar solutions found also in comp.lang.python

xguse / email signature

Last active December 20, 2015 21:38

my gmail signature and public key

	http://about.me/wadunn
	W. Augustine Dunn, III
	Ph.D. Candidate
	Laboratory of Dr. Anthony James
	Department of Molecular Biology and Biochemistry
	Institute for Genomics and Bioinformatics
	University of California, Irvine
	(949) 824-3210 - Lab
	(949) 824-8551 - Fax
	[email protected]

xguse / public email key

Created August 10, 2013 02:13

my public email encryption key. Take it. Use it. Make one for yourself. Send it to me. Screw the NSA.

	-----BEGIN PGP PUBLIC KEY BLOCK-----
	Version: OpenPGP.js v.1.20130712
	Comment: http://openpgpjs.org

	xsBNBFIFl8QBCACn/Arb96LzlcetuPj2yXMqMVUmJueUJ8/alzQCpAZx5JnU
	7R+ajxOgmiV4JxMpOT/9nHJCwDudDrqgoTms1AjJVWoOZTBCpRGq9MpFr0PF
	5eue2ioAdoNZyehFYhh7oN6PvBHxMC9y2Xesiza9d4nartZhES2coBJh7FEX
	E8gOIrQ7c0cWfpapBUmcfYLQtvo1DFK7dLa1zFqFpN/losfVocHu6cEOdEkB
	T0mtedkjhOWAdjq0w3GxYkeXPcbdfGFNM9kW3k+TbF4M4vWGQVgcxgm2g3vc
	tpnUAfNqdwXm6x2jZblr/opvONLlvq4dM0fwi/rKWuGZLpWhuytvQZ1XABEB

xguse / Jacob-Biesinger-public-key

Created August 15, 2013 20:05 — forked from jakebiesinger/Jacob-Biesinger-public-key

	-----BEGIN PGP PUBLIC KEY BLOCK-----
	Version: OpenPGP.js v.1.20130712
	Comment: http://openpgpjs.org

	xsBNBFINLngBCACTfqW1ZsIPtaBCeXGQ+KuG66wBCTVNodqhY5P292sekYOG
	1ldjADX1bO/T88nqQlBgJi/gwzOb9dDkD/MXjcdX3buJS+oiPsHdG9+v34Xq
	owZCbZP4XAHC3epXkpN/K/kMdjY5mPorakeP4eXWKT3XfKwhe/GoZ3eXcxaH
	tfGIK1M055fBCQIuOusgMf55dbsfg9QyzTbXZciP0x9PuUvrd3TaYpebBmYq
	cTc0Z44feQevj+/GQxh8Il4i+eJF1mpa1gzVbAKfnAXu1zxqOuHIwfbaKlgM
	f32fXFC17ya/2ZQ7wkme/E2XOTrSjuSYLj5hewDccYat+T9dtaZRfFWjABEB

xguse / steves_public_key

Created August 15, 2013 20:17 — forked from gawbul/steves_pgp_pubkey

	-----BEGIN PGP PUBLIC KEY BLOCK-----
	Version: GnuPG/MacGPG2 v2.0.20 (Darwin)
	Comment: GPGTools - https://gpgtools.org

	mQINBFIKB18BEADWZvUf+2taIgGEl+AbZVOEuPt1movmT2KG9qY0354RS4EVJU+s
	3edCSm55ynazcJo6ikSEsVFb2LKa9Lmqpf//32Q3Mpt10AX7nLcnxYBrMCu6uVBV
	l+9cpPKIFtOLLZQvLN4LhgS39wAi+Azin3on3LrTWc7knRwCeGrx+UupbDdYiExm
	sVleD9gjKX9ri/sqEdBlNZV48pXrCGbEC3b50Jh1rdPIUg//KZMAwThuOzXo2Y8l
	9pWLWZqbuNXCBNDixq3TVOZAptWrvSSCQDrfA+wJbho9dRR3jurgoF9kb8BiJnsL
	CZkf2R8tMUfgG866okRisRCIE8VbRX19bS6is0czKa/1/HJc0NDhLV4hig2aijsP

Gus Dunn xguse