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You are an AI coding assistant, powered by GPT-5.
You are an interactive CLI tool that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.
You are pair programming with a USER to solve their coding task.
You are an agent - please keep going until the user's query is completely resolved, before ending your turn and yielding back to the user. Only terminate your turn when you are sure that the problem is solved. Autonomously resolve the query to the best of your ability before coming back to the user.
Your main goal is to follow the USER's instructions at each message.
<communication>
@xguse
xguse / g1kv37_vs_hg19.tsv
Last active June 15, 2016 19:23 — forked from lindenb/FastaMD5.java
md5sums and bash pipeline for confirming chromosome validity for human_g1k_v37.fasta
1b22b98cdeb4a9304cb5d48026a85128 1 dna:chromosome chromosome:GRCh37:1:1:249250621:1 chr1
988c28e000e84c26d552359af1ea2e1d 10 dna:chromosome chromosome:GRCh37:10:1:135534747:1 chr10
98c59049a2df285c76ffb1c6db8f8b96 11 dna:chromosome chromosome:GRCh37:11:1:135006516:1 chr11
06cbf126247d89664a4faebad130fe9c GL000202.1 dna:supercontig supercontig::GL000202.1:1:40103:1 chr11_gl000202_random
51851ac0e1a115847ad36449b0015864 12 dna:chromosome chromosome:GRCh37:12:1:133851895:1 chr12
283f8d7892baa81b510a015719ca7b0b 13 dna:chromosome chromosome:GRCh37:13:1:115169878:1 chr13
98f3cae32b2a2e9524bc19813927542e 14 dna:chromosome chromosome:GRCh37:14:1:107349540:1 chr14
e5645a794a8238215b2cd77acb95a078 15 dna:chromosome chromosome:GRCh37:15:1:102531392:1 chr15
fc9b1a7b42b97a864f56b348b06095e6 16 dna:chromosome chromosome:GRCh37:16:1:90354753:1 chr16
351f64d4f4f9ddd45b35336ad97aa6de 17 dna:chromosome chromosome:GRCh37:17:1:81195210:1 chr17
@xguse
xguse / PKGBUILD
Last active August 29, 2015 14:24 — forked from flying-sheep/PKGBUILD
# Maintainer: Meow < a.li.devtty at gmail dot com >
# Get download links and md5 sums for latest version of RStudio desktop
cat <<_EOF_ >/dev/null
## R code #############
require(XML)
page = htmlTreeParse("http://www.rstudio.com/products/rstudio/download/",useInternalNodes = T)
links = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]'),xmlGetAttr,'href')
md5sums = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]/../..//code'),xmlValue)
print(cbind(links,md5sums))

Having trouble installing the latest stable version of tmux?

I know, official package for your OS/distro is outdated and you just want the newest version of tmux.

Well, this script should save you some time with that.

Prerequisities

  • gcc
@xguse
xguse / clip_magic.py
Last active August 29, 2015 14:15 — forked from nova77/clip_magic.py
Add copy to clipboard from IPython!
"""
Add copy to clipboard from IPython!
To install, just copy it to your profile/startup directory, typically:
~/.ipython/profile_default/startup/
Example usage:
%clip hello world
# will store "hello world"
# Ensure we're in a virtualenv.
if [ "$VIRTUAL_ENV" == "" ]
then
echo "ERROR: not in a virtual environment."
exit -1
fi
# Setup variables.
CACHE="/tmp/install-pygtk-$$"
@xguse
xguse / Backend.py
Last active August 29, 2015 14:07 — forked from bpeck/Backend.py
import multiprocessing
import multiprocessing.queues
from flask import Flask
from flask import request
class Backend(object):
def __init__(self, command_queue, host='0.0.0.0', port=8000, debug=True):
self.command_queue = command_queue
self.flask_app = Flask('Backend')
self.flask_app.add_url_rule('/', "handleRequest", self.handleRequest, methods=['GET'])
@xguse
xguse / flask-upload
Last active August 29, 2015 14:06 — forked from dAnjou/flask-upload
<VirtualHost *>
ServerName example.com
WSGIDaemonProcess www user=max group=max threads=5
WSGIScriptAlias / /home/max/Projekte/flask-upload/flask-upload.wsgi
<Directory /home/max/Projekte/flask-upload>
WSGIProcessGroup www
WSGIApplicationGroup %{GLOBAL}
Order deny,allow
@xguse
xguse / 0_reuse_code.js
Created February 2, 2014 23:14
Here are some things you can do with Gists in GistBox.
// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console
@xguse
xguse / noise.sh
Last active August 27, 2025 21:14 — forked from rsvp/noise.sh
#!/usr/bin/env bash
# bash 4.1.5(1) Linux Ubuntu 10.04 Date : 2011-10-04
#
# _______________| noise : ambient Brown noise generator (cf. white noise).
#
# Usage: noise [minutes=59] [band-pass freq center=1786] [wave]
# ^minutes can be any positive integer.
# Command "noise 1" will display peak-level meter.
#
# Dependencies: play (from sox package)