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- gcc
Gus Dunn xguse
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| r-essentials | |
| r-pheatmap | |
| bioconductor-singler | |
| r-seurat | |
| r-hdf5r | |
| r-tidyverse | |
| bioconductor-scater |
xguse
/ g1kv37_vs_hg19.tsv
Last active
June 15, 2016 19:23
— forked from lindenb/FastaMD5.java
md5sums and bash pipeline for confirming chromosome validity for human_g1k_v37.fasta
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| 1b22b98cdeb4a9304cb5d48026a85128 | 1 dna:chromosome chromosome:GRCh37:1:1:249250621:1 | chr1 | |
|---|---|---|---|
| 988c28e000e84c26d552359af1ea2e1d | 10 dna:chromosome chromosome:GRCh37:10:1:135534747:1 | chr10 | |
| 98c59049a2df285c76ffb1c6db8f8b96 | 11 dna:chromosome chromosome:GRCh37:11:1:135006516:1 | chr11 | |
| 06cbf126247d89664a4faebad130fe9c | GL000202.1 dna:supercontig supercontig::GL000202.1:1:40103:1 | chr11_gl000202_random | |
| 51851ac0e1a115847ad36449b0015864 | 12 dna:chromosome chromosome:GRCh37:12:1:133851895:1 | chr12 | |
| 283f8d7892baa81b510a015719ca7b0b | 13 dna:chromosome chromosome:GRCh37:13:1:115169878:1 | chr13 | |
| 98f3cae32b2a2e9524bc19813927542e | 14 dna:chromosome chromosome:GRCh37:14:1:107349540:1 | chr14 | |
| e5645a794a8238215b2cd77acb95a078 | 15 dna:chromosome chromosome:GRCh37:15:1:102531392:1 | chr15 | |
| fc9b1a7b42b97a864f56b348b06095e6 | 16 dna:chromosome chromosome:GRCh37:16:1:90354753:1 | chr16 | |
| 351f64d4f4f9ddd45b35336ad97aa6de | 17 dna:chromosome chromosome:GRCh37:17:1:81195210:1 | chr17 |
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| # Gus | |
| def m(y=3.65E4): | |
| return y - 1 | |
| # Rei |
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| --- | |
| channels: | |
| - http://xguse.github.io/conda-package-repo/pkgs/channel/ | |
| - r | |
| - pandas | |
| - defaults | |
| - https://conda.anaconda.org/davidbgonzalez | |
| show_channel_urls: True |
xguse
/ PKGBUILD
Last active
August 29, 2015 14:24
— forked from flying-sheep/PKGBUILD
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| # Maintainer: Meow < a.li.devtty at gmail dot com > | |
| # Get download links and md5 sums for latest version of RStudio desktop | |
| cat <<_EOF_ >/dev/null | |
| ## R code ############# | |
| require(XML) | |
| page = htmlTreeParse("http://www.rstudio.com/products/rstudio/download/",useInternalNodes = T) | |
| links = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]'),xmlGetAttr,'href') | |
| md5sums = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]/../..//code'),xmlValue) | |
| print(cbind(links,md5sums)) |
xguse
/ _readme.md
Created
May 23, 2015 15:10
— forked from shime/_readme.md
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| == 2015-04-16 14:35:02,200 main INFO This is EasyBuild 2.0.0 (framework: 2.0.0, easyblocks: 2.0.0) on host jupiter. | |
| == 2015-04-16 14:35:02,201 main INFO Command line: --buildpath=/home/gus/.local/stow/eb_install_prefix/easybuild/build --configfiles=/home/gus/.config/easybuild/config.cfg --installpath=/home/gus/.local/stow/eb_install_prefix/easybuild --modules-tool=Lmod --prefix=/home/gus/.local/stow/eb_install_prefix/easybuild --repositorypath=/home/gus/.local/stow/eb_install_prefix/easybuild/ebfiles_repo --robot=/home/gus/.local/easybuild/easyconfigs --sourcepath=/home/gus/.local/stow/eb_install_prefix/easybuild/sources goolf-1.4.10-no-OFED.eb | |
| == 2015-04-16 14:35:02,201 main INFO Using /tmp/eb-7Fsezq as temporary directory | |
| == 2015-04-16 14:35:02,205 main.tools.robot INFO Using robot path(s): ['/home/gus/.local/easybuild/easyconfigs'] | |
| == 2015-04-16 14:35:02,208 main.filetools INFO Command /home/gus/.local/lmod/5.9.3/libexec/lmod found at /home/gus/.local/lmod/5.9.3/libexec/lmod | |
| == 2015-04-16 14:35:02,208 main |
xguse
/ easybuild-oeMnPd.log
Created
April 16, 2015 18:39
2015-04-16 14:36:26,482 main ERROR EasyBuild crashed with an error (at easybuild/main.py:137 in build_and_install_software): Build of /home/gus/.local/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb failed (err: 'build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:384 in parse_cmd_output): cmd " make -j 4 bootstra…
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| /home/gus/.local/stow/eb_install_prefix/easybuild/build/GCC/4.7.2/dummy-dum |
xguse
/ git-2.3.4-goolf-1.4.10.GUS.eb
Last active
August 29, 2015 14:17
git-2.3.4-goolf-1.4.10.GUS.eb
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| ## | |
| # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild | |
| # | |
| # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA | |
| # Authors:: Fotis Georgatos <[email protected]> | |
| # Authors:: Dmitri Gribenko <[email protected]> | |
| # License:: MIT/GPL | |
| # $Id$ | |
| # | |
| # This work implements a part of the HPCBIOS project and is a component of the policy: |
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| LINK git-credential-cache--daemon | |
| LINK git-remote-http | |
| LINK git | |
| LINK test-chmtime | |
| LINK test-ctype | |
| LINK test-config | |
| LINK test-date | |
| LINK test-delta | |
| LINK test-dump-cache-tree | |
| LINK test-dump-split-index |
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