Yixf-Self / gist:a4c8c2b127789919901443c1537860ff

Created January 2, 2020 04:49 — forked from bessarabov/gist:674ea13c77fc8128f24b5e3f53b7f094

One-liner to generate data shown in post 'At what time of day does famous programmers work?' — https://ivan.bessarabov.com/blog/famous-programmers-work-time


	git log --author="Linus Torvalds" --date=iso \| perl -nalE 'if (/^Date:\s+[\d-]{10}\s(\d{2})/) { say $1+0 }' \| sort \| uniq -c\|perl -MList::Util=max -nalE '$h{$F[1]} = $F[0]; }{ $m = max values %h; foreach (0..23) { $h{$_} = 0 if not exists $h{$_} } foreach (sort {$a <=> $b } keys %h) { say sprintf "%02d - %4d %s", $_, $h{$_}, ""x ($h{$_} / $m 50); }'

Yixf-Self / markdown-for-slide-decks.md

Created October 26, 2019 05:03 — forked from johnloy/markdown-for-slide-decks.md

List of markdown presentation tools

Electron apps

Slide deck frameworks supporting Markdown source

Yixf-Self / exome-coverage-multi.sh

Created December 27, 2018 02:26 — forked from stephenturner/exome-coverage-multi.sh

run bedtools coverage on multiple files using GNU parallel

	# Set up to run in GNU parallel.
	find *bam \| parallel 'bedtools coverage -hist -abam {} -b target_regions.bed \| grep ^all > {}.hist.all.txt'

	# What this actually runs:
	bedtools coverage -hist -abam samp.01.bam -b target_regions.bed \| grep ^all > samp.01.bam.hist.all.txt
	bedtools coverage -hist -abam samp.02.bam -b target_regions.bed \| grep ^all > samp.02.bam.hist.all.txt
	bedtools coverage -hist -abam samp.03.bam -b target_regions.bed \| grep ^all > samp.03.bam.hist.all.txt
	bedtools coverage -hist -abam samp.05.bam -b target_regions.bed \| grep ^all > samp.05.bam.hist.all.txt
	bedtools coverage -hist -abam samp.06.bam -b target_regions.bed \| grep ^all > samp.06.bam.hist.all.txt
	bedtools coverage -hist -abam samp.10.bam -b target_regions.bed \| grep ^all > samp.10.bam.hist.all.txt

Yixf-Self / findhao_rss_sources.xml

Created September 26, 2018 01:28 — forked from FindHao/findhao_rss_sources.xml

我的rss订阅源

	This XML file does not appear to have any style information associated with it. The document tree is shown below.
	<opml version="1.0">
	<head>
	<title>
	Subscriptions of find from Inoreader [https://www.inoreader.com]
	</title>
	</head>
	<body>
	<outline text="Blogs" title="Blogs">
	<outline text="cgnail's weblog" title="cgnail's weblog" type="rss" xmlUrl="http://cgnail.github.io/atom.xml" htmlUrl="http://cgnail.github.io/"/>

Yixf-Self / memusg

Created January 18, 2018 09:46 — forked from netj/memusg

memusg -- Measure memory usage of processes

	#!/usr/bin/env bash
	# memusg -- Measure memory usage of processes
	# Usage: memusg COMMAND [ARGS]...
	#
	# Author: Jaeho Shin <[email protected]>
	# Created: 2010-08-16
	############################################################################
	# Copyright 2010 Jaeho Shin. #
	# #
	# Licensed under the Apache License, Version 2.0 (the "License"); #

Yixf-Self / server.R

Created December 5, 2017 09:48 — forked from duxan/server.R

A Shiny/R app to display the Illumina human body map dataset. I have not included the expression data due to it's size (19Gb) but this should work with any RNA-seq data set analysed with a TopHat->Cufflinks->CuffDiff pipeline.

	library(shiny)
	library(deSolve)
	library(cummeRbund)

	# load cuffDiff data, must be in top dir and called cuffData.db:
	cuff = readCufflinks()

	shinyServer(function(input,output) {

	getData = reactive(function() {

Yixf-Self / 000_geom_bag.r

Created September 3, 2017 00:47 — forked from benmarwick/000_geom_bag.r

Basic bagplot geom for ggplot2

	#' Bagplot
	#'
	#' The bag geom is useful for graphical summaries of scatterplots. It
	#' is effective at showing the location, spread, skewness, and
	#' outliers of a data set.
	#'
	#' A bagplot is a bivariate generalization of the well known boxplot. It
	#' was proposed by Rousseeuw, Ruts, and Tukey. This geom plots bagplots that
	#' are very similar to the one described in Rousseeuw et al. and
	#' uses code from their bagplot functions in the aplpack pacakge.

Yixf-Self / fastqc.wdl

Created August 16, 2017 03:51 — forked from seandavi/fastqc.wdl

	task fastqc {
	File fastq

	command {
	fastqc ${fastq}
	}
	output {
	Array[File] results = glob("*html")
	}
	runtime

Yixf-Self / bash-cheat-sheet

Created July 20, 2017 00:43

BASH Cheat Sheet

	B A S H C H E A T S H E E T

	to page output forward (only): command filename \| more
	to page output forward & back: command filename \| less
	to print a dataset: lp datasetname (-d printerid) (-o landscape)

	USE OF QUOTATION MARKS
	echo "$varname" = echo The value of \$varname is \"$varname\"
	= echo "The value of \$varname is \"$varname\"."
	$fred='Four spaces between these words.'

Yixf-Self / bash-cheatsheet.sh

Created July 20, 2017 00:35 — forked from LeCoupa/bash-cheatsheet.sh

Bash CheatSheet for UNIX Systems

	#!/bin/bash
	#####################################################
	# Name: Bash CheatSheet for Mac OSX
	#
	# A little overlook of the Bash basics
	#
	# Usage:
	#
	# Author: J. Le Coupanec
	# Date: 2014/11/04

	# Set up to run in GNU parallel.
	find *bam \| parallel 'bedtools coverage -hist -abam {} -b target_regions.bed \| grep ^all > {}.hist.all.txt'

	# What this actually runs:
	bedtools coverage -hist -abam samp.01.bam -b target_regions.bed \| grep ^all > samp.01.bam.hist.all.txt
	bedtools coverage -hist -abam samp.02.bam -b target_regions.bed \| grep ^all > samp.02.bam.hist.all.txt
	bedtools coverage -hist -abam samp.03.bam -b target_regions.bed \| grep ^all > samp.03.bam.hist.all.txt
	bedtools coverage -hist -abam samp.05.bam -b target_regions.bed \| grep ^all > samp.05.bam.hist.all.txt
	bedtools coverage -hist -abam samp.06.bam -b target_regions.bed \| grep ^all > samp.06.bam.hist.all.txt
	bedtools coverage -hist -abam samp.10.bam -b target_regions.bed \| grep ^all > samp.10.bam.hist.all.txt

Yi Xianfu Yixf-Self

Electron apps

Slide deck frameworks supporting Markdown source