| # file is downloaded from covid19.sanger.ac.uk with customised lineage selection | |
| data<- read_csv("C:/Users/Theo/Desktop/Estimated_Cases_in_England (2).csv") | |
| library(gganimate) | |
| data$date | |
| library(MetBrewer) | |
| lookup =c("B"="Other B lineages","B.1.1.529"="Omicron", "B.1.1.7"="Alpha","B.1.617.2"="Delta","B.1.177"="B.1.177","AY.4.2"="AY.4.2") |
here-here is like history but it saves the time you ran a command and the directory you were in when you ran it.
Running here tells you all the commands you ran in this directory even if you were on a different server.
I commonly wonder how I made a file (and maybe why). Sometimes I try looking in my history (using the history command).
This makes that easier by clearing out some of the noise.
| from __future__ import print_function, division | |
| from math import sqrt | |
| from scipy.special import ndtri | |
| def _proportion_confidence_interval(r, n, z): | |
| """Compute confidence interval for a proportion. | |
| Follows notation described on pages 46--47 of [1]. |
| ''' | |
| :Date: 26 Jul 2016 | |
| :Author: Public Health England | |
| ''' | |
| """Detect peaks in data based on their amplitude and other features.""" | |
| import argparse | |
| from khmer import khmer_args | |
| import khmer |
Once in a while, you may need to cleanup resources (containers, volumes, images, networks) ...
// see: https://github.com/chadoe/docker-cleanup-volumes
$ docker volume rm $(docker volume ls -qf dangling=true)
$ docker volume ls -qf dangling=true | xargs -r docker volume rm
| group :production do | |
| gem 'unicorn' | |
| # Enable gzip compression on heroku, but don't compress images. | |
| gem 'heroku-deflater' | |
| # Heroku injects it if it's not in there already | |
| gem 'rails_12factor' | |
| end |
| # CoffeeScript source | |
| $.fn.forceScrollbars = -> | |
| @css position: 'static' | |
| @[0].offsetHeight if @length > 0 | |
| @css position: 'relative' |
| # add RailsAdmin to the Gemfile | |
| # do NOT add devise | |
| gem "rails_admin", :git => "git://github.com/sferik/rails_admin.git" | |
| # run Bundler | |
| bundle | |
| # run the generator for RailsAdmin | |
| # looks like it's broken, but it just does not install devise | |
| # you may also remove the app/config/locales/devise.en.yml |
| sudo apt-get install libtool | |
| git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git | |
| cd dnaa-git | |
| # bfast required. see above gist | |
| cp -r ../bfast-git ./bfast | |
| # samtools require. see above gist. | |
| cp -r ../samtools-svn/ ./samtools | |
| sh autogen.sh && ./configure && make && sudo make install |
