brentp

sudo apt-get install libtool
git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git
cd dnaa-git
# bfast required. see above gist
cp -r ../bfast-git ./bfast
# samtools require. see above gist.
cp -r ../samtools-svn/ ./samtools

sh autogen.sh && ./configure && make && sudo make install

phoet

# add RailsAdmin to the Gemfile
# do NOT add devise
gem "rails_admin", :git => "git://github.com/sferik/rails_admin.git"

# run Bundler
bundle

# run the generator for RailsAdmin
# looks like it's broken, but it just does not install devise
# you may also remove the app/config/locales/devise.en.yml

madrobby

# CoffeeScript source

$.fn.forceScrollbars = ->
  @css position: 'static'
  @[0].offsetHeight if @length > 0
  @css position: 'relative'

pcreux

group :production do
  gem 'unicorn'

  # Enable gzip compression on heroku, but don't compress images.
  gem 'heroku-deflater'

  # Heroku injects it if it's not in there already
  gem 'rails_12factor'
end

bastman

Docker - How to cleanup (unused) resources

Once in a while, you may need to cleanup resources (containers, volumes, images, networks) ...

delete volumes

// see: https://github.com/chadoe/docker-cleanup-volumes

$ docker volume rm $(docker volume ls -qf dangling=true)

$ docker volume ls -qf dangling=true | xargs -r docker volume rm

alexjironkin

'''
:Date: 26 Jul 2016
:Author: Public Health England
'''

"""Detect peaks in data based on their amplitude and other features."""
import argparse

from khmer import khmer_args
import khmer

maidens

from __future__ import print_function, division

from math import sqrt

from scipy.special import ndtri

def _proportion_confidence_interval(r, n, z):
    """Compute confidence interval for a proportion.
    
    Follows notation described on pages 46--47 of [1]. 

bewt85

here-here

here-here is like history but it saves the time you ran a command and the directory you were in when you ran it. Running here tells you all the commands you ran in this directory even if you were on a different server.

I commonly wonder how I made a file (and maybe why). Sometimes I try looking in my history (using the history command). This makes that easier by clearing out some of the noise.

Installation

theosanderson

# file is downloaded from covid19.sanger.ac.uk with customised lineage selection
data<- read_csv("C:/Users/Theo/Desktop/Estimated_Cases_in_England (2).csv")
library(gganimate)
data$date


library(MetBrewer)


lookup =c("B"="Other B lineages","B.1.1.529"="Omicron", "B.1.1.7"="Alpha","B.1.617.2"="Delta","B.1.177"="B.1.177","AY.4.2"="AY.4.2")