Mainak Jas jasmainak

jasmainak / plot_nonspiking_lfp.py

Created May 11, 2021 14:39 — forked from cjayb/plot_nonspiking_lfp.py

	# %%
	# %matplotlib widget
	import matplotlib.pyplot as plt
	from matplotlib.colors import SymLogNorm
	from mpl_toolkits.axes_grid1.inset_locator import inset_axes
	import numpy as np

	from neuron import h
	from hnn_core.network_builder import load_custom_mechanisms
	from hnn_core.lfp import _LFPElectrode

jasmainak / remap_evoked.py

Created March 12, 2019 21:33

	def remap_evoked(evoked, info_to, mode='fast'):
	# get info that should only differ in dev_head transform
	from mne import pick_types, pick_info
	from mne.forward import _map_meg_channels
	picks = pick_types(evoked.info, meg=True, eeg=False, ref_meg=True)

	info_from = pick_info(evoked.info, picks)
	info_to = pick_info(info_to, picks)
	mapping = _map_meg_channels(info_from, info_to, mode=mode)

jasmainak / plot_bad_epochs.py

Created March 5, 2019 03:16

visualize bad epochs

	import numpy as np
	from autoreject import RejectLog
	epochs_orig = epochs.copy()

	# now interactively mark the bad epochs
	epochs.plot()

	bad_idxs = [idx for idx, drop in enumerate(epochs.drop_log) if
	drop == ['USER']]

jasmainak / automations.sh

Created January 6, 2019 04:42 — forked from raghavrv/automations.sh

Some automation aliases and scripts for Telecom Paristech desktop / TSI server

	export LANG=en_US.UTF-8

	# COMMON CONFS

	# Use pgrep with full command path and display the name
	alias checktuns="ps x \| grep 'ssh -N'"
	alias pgrep="ps x \| grep "

	# Set the scikit path env var
	export SCIKIT_LEARN_PATH=~/raghav/code/scikit-learn

jasmainak / hnn_environment.yml

Created December 21, 2018 21:24 — forked from bloyl/hnn_environment.yml

jasmainak / ps.py

Created July 18, 2018 02:30 — forked from larsoner/ps.py

	# -- coding: utf-8 --
	"""
	PySurfer-like plotting using VisPy scene.
	"""

	import numpy as np

	from vispy import scene, app
	import mne
	import nibabel

jasmainak / haufe.ipynb

Created July 14, 2017 09:25 — forked from wmvanvliet/haufe.ipynb

Testing the Haufe trick

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jasmainak / meta_epochs_with_pandas.ipynb

Created July 14, 2017 09:20 — forked from agramfort/meta_epochs_with_pandas.ipynb

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jasmainak / scipy_tests.txt

Last active February 3, 2016 15:47

	In [1]: import scipy

	In [2]: scipy.test('full')
	Running unit tests for scipy
	NumPy version 1.10.2
	NumPy relaxed strides checking option: False
	NumPy is installed in /home/mainak/anaconda/lib/python2.7/site-packages/numpy
	SciPy version 0.16.1
	SciPy is installed in /home/mainak/anaconda/lib/python2.7/site-packages/scipy
	Python version 2.7.11 \|Anaconda 1.9.1 (64-bit)\| (default, Dec 6 2015, 18:08:32) [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]

jasmainak / mkl_error.py

Created February 3, 2016 13:55

mkl error

	======================================================================
	ERROR: Failure: ImportError (libopenblas.so.0: cannot open shared object file: No such file or directory)
	----------------------------------------------------------------------
	Traceback (most recent call last):
	File "/home/mainak/anaconda/lib/python2.7/site-packages/nose/loader.py", line 420, in loadTestsFromName
	addr.filename, addr.module)
	File "/home/mainak/anaconda/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
	return self.importFromDir(dir_path, fqname)
	File "/home/mainak/anaconda/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
	mod = load_module(part_fqname, fh, filename, desc)