| # Example from http://jakevdp.github.io/blog/2013/06/01/ipython-notebook-javascript-python-communication/ adapted for IPython 2.0 | |
| # Add an input form similar to what we saw above | |
| from IPython.display import HTML | |
| from math import pi, sin | |
| input_form = """ | |
| <div style="background-color:gainsboro; border:solid black; width:600px; padding:20px;"> | |
| Code: <input type="text" id="code_input" size="50" height="2" value="sin(pi / 2)"><br> | |
| Result: <input type="text" id="result_output" size="50" value="1.0"><br> |
| ## install Catalyst proprietary | |
| sudo ntfsfix /dev/sda2 | |
| sudo cp /etc/X11/xorg.conf /etc/X11/xorg.conf.BAK | |
| sudo apt-get remove --purge fglrx* | |
| sudo apt-get install linux-headers-generic | |
| sudo apt-get install fglrx xvba-va-driver libva-glx1 libva-egl1 vainfo | |
| sudo amdconfig --initial | |
| ## install build essentials | |
| sudo apt-get install cmake |
| from __future__ import absolute_import | |
| from __future__ import print_function | |
| from keras.datasets import mnist | |
| from keras.models import Sequential | |
| from keras.layers.core import Dense, Dropout, Activation, Flatten | |
| from keras.layers.convolutional import Convolution2D, MaxPooling2D | |
| from keras.utils import np_utils | |
| from scipy.special import expit | |
| import numpy as np | |
| np.set_printoptions(suppress=True) |
| """ | |
| poisson_reconstruct.py | |
| Fast Poisson Reconstruction in Python | |
| Copyright (c) 2014 Jack Doerner | |
| Permission is hereby granted, free of charge, to any person obtaining a copy | |
| of this software and associated documentation files (the "Software"), to deal | |
| in the Software without restriction, including without limitation the rights | |
| to use, copy, modify, merge, publish, distribute, sublicense, and/or sell |
| # By Jake VanderPlas | |
| # License: BSD-style | |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| def discrete_cmap(N, base_cmap=None): | |
| """Create an N-bin discrete colormap from the specified input map""" |
This function takes a renderer and displays the output directly into IPython
def vtk_show(renderer, w=100, h=100):
"""
Takes vtkRenderer instance and returns an IPython Image with the rendering.
"""
renderWindow = vtkRenderWindow()
renderWindow.SetOffScreenRendering(1)
renderWindow.AddRenderer(renderer)
3rdParty
| # Assuming an Ubuntu Docker image | |
| $ docker run -it <image> /bin/bash |
| var tags = newArray("nucleus-1","nucleus-2","cyto-1", "cyto-2"); | |
| var colors = newArray("red", "green", "blue", "magenta"); | |
| var commands = newArray("Select by tag..."); | |
| var menu = Array.concat(commands, tags); | |
| var pmCmds = newMenu("Popup Menu", menu); | |
| macro "Popup Menu" { | |
| cmd = getArgument(); | |
| if (cmd=="Select by tag...") { | |
| Dialog.create("Title"); |
