mdoering

package life.catalogue.db.tree;

import life.catalogue.common.io.Resources;
import life.catalogue.dao.FileMetricsDatasetDao;

import java.io.File;

import org.apache.commons.lang3.time.StopWatch;
import org.junit.Test;

mdoering

Aalbu R.
Adlard R.
Adriaenssens E.
Aedo C.
Aescht E.
Akkari N.
Alonso-Zarazaga M. A.
Alvarez B.
Alvarez F.
Anderson G.

mdoering

col=> select key,alias,license from dataset_source where dataset_key =2328 order by key;
 key  |                alias                 | license 
------+--------------------------------------+---------
 1005 | CCW                                  | CC0
 1008 | ReptileDB                            | CC_BY
 1010 | FishBase                             | CC_BY
 1011 | FLOW                                 | CC_BY
 1014 | ICTV MSL                             | CC_BY
 1015 | ILDIS                                | CC_BY
 1018 | LepIndex                             | CC_BY

mdoering

{
"created":"2021-07-29T09:24:54.644871",
"createdBy":101,
"modified":"2021-08-03T07:01:02.918149",
"modifiedBy":101,
"key":2328,
"sourceKey":3,
"type":"taxonomic",
"origin":"released",
"attempt":50,

mdoering

---
title: 'World Foraminifera Database'
alias: 'WoRMS Foraminifera'
description: "This World Database of all species of Foraminifera ever described, is part of the World Register of Marine Species (WoRMS), a global initiative to provide a register of all marine organisms.\r\nForaminifera (‘hole bearers’) or forams for short, are a large phylum of amoeboid protozoans (single celled) with reticulating pseudopods, fine strands of cytoplasm that branch and merge to form a dynamic net. They usually produce a test (or shell) which can have one or more chambers, and are made of calcium carbonate (CaCO3) or mineral grains or other particles glued together. The tests are usually less than 0.5 mm in size, but the largest can be up to 20 cm across. Foraminifera are among the most abundant and scientifically important groups of marine organisms. The tests of recently dead planktic foraminifera are so abundant that they form a thick blanket over one third of the surface of the Earth (as Globigerina ooze on the ocean floo

mdoering

alias: "XAST{attempt}"
title: Extended Asterales
version: "{attempt}"
description: |
  The World Plants and WCVP Asterales order extended by various merge sectors to increase coverage 
  and test system behavior.

# GBIF publisher keys to follow and create sectors for if missing
sourcePublisher: 
#  - bb922300-7ddb-11de-a300-90ac77aa923f # Plazi

mdoering

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mdoering

autoImport: true
validate: false
runAssertions: false
groupBasionyms: true
keepLonelyAutonyms: false
keepEmptyImplicitNames: false

blacklist:
  - Calendrella cinerea ongumaensis # https://github.com/gbif/checklistbank/issues/47
  - Tricholaema leucomelan namaqua  # https://github.com/gbif/checklistbank/issues/46

mdoering

alias: "XTEST-{date,yyyy-MM-dd}"
title: XRelease Test
version: "{date,yyyy-MM-dd}"
description: Testing the XRelease feature of ChecklistBank

# taxon to use for incertae sedis names during merges
incertaeSedis:
  name: incertae sedis
  rank: unranked
  status: PROVISIONALLY_ACCEPTED

mdoering

{
    "DOI": "10.1007/s00705-021-05156-1",
    "ISSN": [
        "0304-8608",
        "1432-8798"
    ],
    "URL": "http://dx.doi.org/10.1007/s00705-021-05156-1",
    "alternative-id": [
        "5156"
    ],