Olga Botvinnik olgabot
olgabot
/ multiqc_report.html
Created
July 13, 2018 21:08
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| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <!-- | |
| __ __ _ _ _ ___ ____ | |
| | \/ |_ _| | |_(_)/ _ \ / ___| | |
| | |\/| | | | | | __| | | | | | | |
| | | | | |_| | | |_| | |_| | |___ | |
| |_| |_|\__,_|_|\__|_|\__\_\\____| |
olgabot
/ reflow_multiqc_too_many_files.txt
Created
July 11, 2018 22:00
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| (base) | |
| ✘ Wed 11 Jul - 14:46 ~/code/tick-genome/reflow origin ☊ master 2☀ 4● | |
| reflow run multiqc.rf -input s3://olgabot-maca/multiqc_test_input/170907_A00111_0051_BH2HWLDMXX/ -output s3://olgabot-maca/multiqc_test_output/170907_A00111_0051_BH2HWLDMXX/ | |
| reflow: run ID: 49c71d97 | |
| reflow: <- multiqc.Main 328b1028 err extern 51s 0B | |
| error exec sha256:328b10283ac6dde72a3b28c74952e85ef31bf671d4ea8bd3b66d0740aed52def: exited with code 1 | |
| /Users/olgabot/code/tick-genome/reflow/multiqc.rf:26:16 | |
| reflow: total n=2 time=52s | |
| ident n ncache transfer runtime(m) cpu mem(GiB) disk(GiB) tmp(GiB) | |
| multiqc.Main 1 0 0B |
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| ✘ Thu 31 May - 17:24 ~/code/reflow-workflows origin ☊ olgabot/sourmash 1● | |
| reflow run sourmash.rf | |
| reflow: run ID: 4e1d7c06 | |
| reflow: <- sourmash.Trim f046b408 err exec 33m28s 0B | |
| error exec sha256:f046b4086edc0cee84b46d633a43fff01d203d4b3c92442cf9a77d0d7276f000: exited with code 1 | |
| /Users/olgabot/code/reflow-workflows/sourmash.rf:40:6 | |
| ec2-54-214-227-181.us-west-2.compute.amazonaws.com:9000/f1d4fc064c7a85c8/f046b4086edc0cee84b46d633a43fff01d203d4b3c92442cf9a77d0d7276f000 | |
| czbiohub/sourmash | |
| command: | |
| cd {{out}} |
olgabot
/ 900_matplotlib_use14corefonts_error.ipynb
Created
December 6, 2017 20:30
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olgabot
/ 017_aggregate_samplesheets.ipynb
Created
October 18, 2017 20:34
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olgabot
/ 014_rotate_i7_indices_for_updated_samplesheets.ipynb
Created
October 16, 2017 19:05
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| Last login: Thu Sep 14 09:24:05 on ttys007 | |
| ➜ ~ brew cask install virtualbox | |
| brew cask install vagrant | |
| brew cask install vagrant-manager | |
| ==> Satisfying dependencies | |
| ==> Downloading http://download.virtualbox.org/virtualbox/5.1.26/VirtualBox-5.1.26-117224-OSX.dmg | |
| ######################################################################## 100.0% | |
| ==> Verifying checksum for Cask virtualbox | |
| ==> Installing Cask virtualbox | |
| ==> Running installer for virtualbox; your password may be necessary. |
olgabot
/ params.txt
Created
September 15, 2017 22:40
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| Command line: /Users/olgabot/anaconda3/envs/winky/bin/spades.py --12 /Users/olgabot/code/winky/winky/test/data/ZN-1-concatenated.fastq -o /Users/olgabot/code/winky/notebooks/spades-ZN-1 | |
| System information: | |
| SPAdes version: 3.11.0 | |
| Python version: 3.5.2 | |
| OS: Darwin-16.7.0-x86_64-i386-64bit | |
| Output dir: /Users/olgabot/code/winky/notebooks/spades-ZN-1 | |
| Mode: read error correction and assembling | |
| Debug mode is turned OFF |
olgabot
/ dobby_aggregate_adjust_picklist_start.txt
Created
September 11, 2017 02:01
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| (dobby) ➜ dobby git:(adjust_picklist_start_number) ✗ ls -Str ~/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/*.csv | xargs sobby aggregate --output-folder test_aggregate | |
| zsh: correct 'sobby' to 'dobby' [nyae]? y | |
| Reading exising pick lists in test_aggregate ... | |
| Done. 15 picklists found. | |
| Wrote 7 files (/Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/B003285_echo.csv, /Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/MAA001854_echo.csv, /Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/B001688_echo.csv, /Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/MAA001897_echo.csv, /Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/MAA001856_echo.csv, /Users/olgabot/googledrive/MACA/384W_QC/plate_reader/raw_plate_reader_output/3Month/cherrypicked/MAA0 |
olgabot
/ 92_dropout_plot.ipynb
Created
August 29, 2017 18:23
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