Olga Botvinnik olgabot

title	Macbook Setup
date	2017-07-19 18:57:02 -0700
draft	true

Turns out I have a really custom setup ... Here is what I had to do to install everything I need to get started

Chrome
~~Quicksilver~~ - deprecated in favor of Spotlight Search

How this output was created:

outrigger/commandline.py index --sj-out-tab ~/projects/tasic2016/sj_out_tab/*SJ.out.tab --gtf outrigger/tests/data/tasic2016/unprocessed/gtf/gencode.vM10.annotation.subset.gtf --output $OUTPUT

	# -- coding: utf-8 --
	import locale
	import sys

	import click
	import dash
	from dash.dependencies import Output, Input
	import dash_html_components as html
	import dash_core_components as dcc
	import numpy as np

	Last login: Mon Aug 14 16:42:56 on ttys007
	~ source activate maca-dash
	(maca-dash) ➜ ~ conda install --yes phat
	Fetching package metadata ...............

	PackageNotFoundError: Package missing in current osx-64 channels:
	- phat

	Close matches found; did you mean one of these?

	Last login: Wed Aug 9 14:49:47 on ttys002
	➜ ~ ls
	Applications Music notebooks
	Creative Cloud Files Pictures olgabot.github.io-source-deprecated
	Desktop Public projects
	Documents accessKeys.csv pycon
	Downloads anaconda3 python_for_biologists
	Google Drive code seaborn-data
	Library docker youtube
	Movies java_error_in_pycharm_308.log

	(maca) ➜ ExpressionMatrix2 git:(master) conda create -n ExpressionMatrix2 python=3 boost graphviz
	Fetching package metadata ...............
	Solving package specifications: .

	Package plan for installation in environment /Users/olgabot/anaconda3/envs/ExpressionMatrix2:

	The following NEW packages will be INSTALLED:

	boost: 1.61.0-py36_0
	freetype: 2.5.5-2