TransGirlCodes

box::use(./validate_if_box[...], data.table[...], data.validator[...])

test_tbl <- data.table(a = 1:5, b = 6:10)
test_schema <- data.table(name = c("a", "b"), class = c("numeric", "numeric"))

validate_columns_exist(validate(test_tbl), test_schema)

TransGirlCodes

Keybase proof

I hereby claim:

• I am transgirlcodes on github.
• I am transgirlcodes (https://keybase.io/transgirlcodes) on keybase.
• I have a public key ASCZD-CEOGt6bkjrs7kC-rIIO1DzwzFCZWZwf9GWiM0bvwo

To claim this, I am signing this object:

TransGirlCodes

#!/us/bin/env nextflow

//  Configuration & parameters
nextflow.enable.dsl = 2

// Processes                                                                    
// ---------                                                                    
process pullHifiReads {                                                         
    input:                                                                      
       path tarball                                                             

TransGirlCodes

### A Pluto.jl notebook ###
# v0.17.7

using Markdown
using InteractiveUtils

# ╔═╡ 47e088e3-00ae-46b2-b0ba-325e52156381
import Pkg; Pkg.activate("/Users/bward/repos/github/BioJulia/Kmers.jl")

# ╔═╡ ead5355a-0262-4617-8551-d6b1d21c62bc

TransGirlCodes

### A Pluto.jl notebook ###
# v0.17.7

using Markdown
using InteractiveUtils

# ╔═╡ 47e088e3-00ae-46b2-b0ba-325e52156381
import Pkg; Pkg.activate("/Users/bward/repos/github/BioJulia/Kmers.jl")

# ╔═╡ ead5355a-0262-4617-8551-d6b1d21c62bc

TransGirlCodes

Keybase proof

I hereby claim:

• I am SabrinaJaye on github.
• I am sabrinajaye (https://keybase.io/sabrinajaye) on keybase.
• I have a public key whose fingerprint is 1B61 8245 FD24 5F98 36B9 C8CD 328B 9904 045A 2D7E

To claim this, I am signing this object:

TransGirlCodes

using BioSequences, BenchmarkTools

# In BioSequences.jl kmers are called Mer, not Kmer so there is no name clash.
struct Kmer{A<:NucleicAcidAlphabet{2},K,N}
    data::NTuple{N,UInt64}
end

const DNAKmer{K,N} = Kmer{DNAAlphabet{2},K,N}

###

TransGirlCodes

Keybase proof

I hereby claim:

• I am BenJWard on github.
• I am benjward (https://keybase.io/benjward) on keybase.
• I have a public key whose fingerprint is 612E 4FB8 FF0A 78DB 5917 A2A8 ACF2 1E71 286A CAFB

To claim this, I am signing this object:

TransGirlCodes

#!/usr/bin/env julia
######################################################################
# Overwrite REQUIRE using dependency information from Project.toml.
#
# Call from the root of the package repository.
#
# Has some basic sanity checks, but **use at your own risk**, `REQUIRE`
# will be overwritten.
#
# The purpose of this script is to appease attobot, until

TransGirlCodes

function scan(T, filename)
    reader = open(T, filename)
    record = eltype(reader)()
    n = 0
    try
        while true
            read!(reader, record)
            n += 1
        end
    catch ex