July 13, 2013 04:47 · January 1, 2016 17:29 · January 4, 2016 18:29 · August 29, 2015 14:04 · August 29, 2015 14:18 · December 26, 2015 19:27
 --- Spawns cmd if no client can be found matching properties
 -- If such a client can be found, pop to first tag where it is visible, and give it focus
 -- @param cmd the command to execute
 -- @param properties a table of properties to match against clients. Possible entries: any properties of the client object
 function run_or_raise(cmd, properties)
   local clients = client.get()
   local focused = awful.client.next(0)
   local findex = 0
   local matched_clients = {}
   local n = 0
 from java.io import File

 KEGG_DIR = "/Users/kozo2/kegg/"

 CARBOHYDRATE = "Carbohydrate"

 pathwayids_for = { CARBOHYDRATE : ["00010", "00020", "00030", "00040", "00051", "00052", "00053", "00500", "00520", "00562", "00620", "00630", "00640", "00650", "00660"] }
 ORGANISM = "eco"

 loadNetworkTF = cyAppAdapter.get_LoadNetworkFileTaskFactory()
 import net.liftweb.json.Xml // converts XML to JSON
 import com.mongodb.casbah.Imports._ // To put stuff in Mongo
 import com.mongodb.casbah.MongoDB // To connect to Mongo
 import com.mongodb.util.JSON // To parse JSON into a MongoDBObject
 import net.liftweb.json._ // To output Lift JSON as actual JSON
 import scala.xml.XML // To load XML

 // load the XML
 val xml = XML.load("http://www.w3schools.com/xml/note.xml")
 // fire up mongo connection
 library(gtable)
 d=data.frame(g=c(1,1,1,2,2,3),x=c(1,2,3,1,2,3),y=1:6);
 p = ggplot(d,aes(x,y))+geom_bar(stat="identity")+facet_wrap(~g) 
 gt= ggplot_gtable(ggplot_build(g))

 graphics.off()

 for (p in c(4, 7, 10)) {
  pdf(paste0("plot-", p, ".pdf"))
  grid.draw(gt[,c(1:3, p, 12)])
 $ docker run -it ubuntu:xenial
 Unable to find image 'ubuntu:xenial' locally
 xenial: Pulling from library/ubuntu
 ...

 Digest: sha256:a0ee7647e24c8494f1cf6b94f1a3cd127f423268293c25d924fbe18fd82db5a4
 Status: Downloaded newer image for ubuntu:xenial

 root@3479ac349e68:/# cd
 # License:
 #   I hereby state this snippet is below "threshold of originality" where applicable (public domain).
 #
 # Otherwise, since initially posted on Stackoverflow, use as:
 #   CC-BY-SA 3.0 skyking, Glenn Maynard, Axel Huebl
 #   http://stackoverflow.com/a/31047259/2719194
 #   http://stackoverflow.com/a/4858123/2719194

 import types
	--- Spawns cmd if no client can be found matching properties
	-- If such a client can be found, pop to first tag where it is visible, and give it focus
	-- @param cmd the command to execute
	-- @param properties a table of properties to match against clients. Possible entries: any properties of the client object
	function run_or_raise(cmd, properties)
	local clients = client.get()
	local focused = awful.client.next(0)
	local findex = 0
	local matched_clients = {}
	local n = 0
	from java.io import File

	KEGG_DIR = "/Users/kozo2/kegg/"

	CARBOHYDRATE = "Carbohydrate"

	pathwayids_for = { CARBOHYDRATE : ["00010", "00020", "00030", "00040", "00051", "00052", "00053", "00500", "00520", "00562", "00620", "00630", "00640", "00650", "00660"] }
	ORGANISM = "eco"

	loadNetworkTF = cyAppAdapter.get_LoadNetworkFileTaskFactory()
	import net.liftweb.json.Xml // converts XML to JSON
	import com.mongodb.casbah.Imports._ // To put stuff in Mongo
	import com.mongodb.casbah.MongoDB // To connect to Mongo
	import com.mongodb.util.JSON // To parse JSON into a MongoDBObject
	import net.liftweb.json._ // To output Lift JSON as actual JSON
	import scala.xml.XML // To load XML

	// load the XML
	val xml = XML.load("http://www.w3schools.com/xml/note.xml")
	// fire up mongo connection
	library(gtable)
	d=data.frame(g=c(1,1,1,2,2,3),x=c(1,2,3,1,2,3),y=1:6);
	p = ggplot(d,aes(x,y))+geom_bar(stat="identity")+facet_wrap(~g)
	gt= ggplot_gtable(ggplot_build(g))

	graphics.off()

	for (p in c(4, 7, 10)) {
	pdf(paste0("plot-", p, ".pdf"))
	grid.draw(gt[,c(1:3, p, 12)])
	$ docker run -it ubuntu:xenial
	Unable to find image 'ubuntu:xenial' locally
	xenial: Pulling from library/ubuntu
	...

	Digest: sha256:a0ee7647e24c8494f1cf6b94f1a3cd127f423268293c25d924fbe18fd82db5a4
	Status: Downloaded newer image for ubuntu:xenial

	root@3479ac349e68:/# cd
	# License:
	# I hereby state this snippet is below "threshold of originality" where applicable (public domain).
	#
	# Otherwise, since initially posted on Stackoverflow, use as:
	# CC-BY-SA 3.0 skyking, Glenn Maynard, Axel Huebl
	# http://stackoverflow.com/a/31047259/2719194
	# http://stackoverflow.com/a/4858123/2719194

	import types